begin model begin compartments c0 3 1 Cytoplasm 3 1 plasma membrane 2 1 end compartments begin parameters k_sev 0.01 C0 0.5 l 0.255 k_nuc 60.0 Km 2.0 V0 0.07 w 25.0 phi 10.0 k_cap 0.04 k_shrink 0.01 end parameters begin molecule types end molecule types begin seed species end seed species begin observables end observables begin functions # Commented out functions correspond to observables that cannot be exported into BNGL yet # Vmb() = V0 * Bp / (Bp + (phi * exp((w / Bp)))) # f_nuc() = k_nuc * arp23_act * l * F_actin * G_actin / (Km + arp23_act) end functions begin reaction rules end reaction rules end model generate_network({max_iter=>1,max_agg=>10,overwrite=>1})